IL_9BS0_097
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BS0_097 not in the Motif Atlas
- Homologous match to IL_9DFE_114
- Geometric discrepancy: 0.1787
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BS0|1|B|C|69
9BS0|1|B|G|70
9BS0|1|B|A|71
9BS0|1|B|U|72
9BS0|1|B|G|73
9BS0|1|B|G|74
9BS0|1|B|U|75
9BS0|1|B|A|76
9BS0|1|B|G|77
*
9BS0|1|B|U|95
9BS0|1|B|G|96
9BS0|1|B|A|97
9BS0|1|B|G|98
9BS0|1|B|A|99
9BS0|1|B|G|100
9BS0|1|B|U|101
9BS0|1|B|A|102
9BS0|1|B|G|103
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- Large ribosomal subunit protein uL30
Coloring options: