IL_9BSS_095
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BSS_095 not in the Motif Atlas
- Homologous match to IL_9DFE_114
- Geometric discrepancy: 0.5574
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BSS|1|B|C|69
9BSS|1|B|G|70
9BSS|1|B|A|71
9BSS|1|B|U|72
9BSS|1|B|G|73
9BSS|1|B|G|74
9BSS|1|B|U|75
9BSS|1|B|A|76
9BSS|1|B|G|77
*
9BSS|1|B|U|95
9BSS|1|B|G|96
9BSS|1|B|A|97
9BSS|1|B|G|98
9BSS|1|B|A|99
9BSS|1|B|G|100
9BSS|1|B|U|101
9BSS|1|B|A|102
9BSS|1|B|G|103
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: