IL_9BUP_002
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCGAAUUU*AUAAUUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9BUP|1|AA|U|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_002 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.0613
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|AA|C|31
9BUP|1|AA|C|32
9BUP|1|AA|G|33
9BUP|1|AA|A|34
9BUP|1|AA|A|35
9BUP|1|AA|U|36
9BUP|1|AA|U|37
9BUP|1|AA|U|38
*
9BUP|1|AA|A|45
9BUP|1|AA|U|46
9BUP|1|AA|A|47
9BUP|1|AA|A|48
9BUP|1|AA|U|49
9BUP|1|AA|U|50
9BUP|1|AA|A|51
9BUP|1|AA|A|52
9BUP|1|AA|G|53
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain Ac
- Ribosomal protein L37
- Chain Ai
- Large ribosomal subunit protein eL42
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