IL_9BUP_003
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAGUAA*UGAACAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_003 not in the Motif Atlas
- Homologous match to IL_8CRE_006
- Geometric discrepancy: 0.0838
- The information below is about IL_8CRE_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_65594.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|U|82
9BUP|1|AA|U|83
9BUP|1|AA|U|84
9BUP|1|AA|A|85
9BUP|1|AA|G|86
9BUP|1|AA|U|87
9BUP|1|AA|A|88
9BUP|1|AA|A|89
*
9BUP|1|AA|U|97
9BUP|1|AA|G|98
9BUP|1|AA|A|99
9BUP|1|AA|A|100
9BUP|1|AA|C|101
9BUP|1|AA|A|102
9BUP|1|AA|A|103
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18-2
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