IL_9BUP_017
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAAAU*AUGGAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_017 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.0701
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BUP|1|AA|C|414
9BUP|1|AA|U|415
9BUP|1|AA|G|416
9BUP|1|AA|A|417
9BUP|1|AA|A|418
9BUP|1|AA|A|419
9BUP|1|AA|U|420
*
9BUP|1|AC|A|17
9BUP|1|AC|U|18
9BUP|1|AC|G|19
9BUP|1|AC|G|20
9BUP|1|AC|A|21
9BUP|1|AC|U|22
9BUP|1|AC|G|23
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein L32
- Chain AF
- 60S ribosomal protein L4
- Chain AW
- 60S ribosomal protein L17
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