IL_9BUP_019

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_019 not in the Motif Atlas

Geometric match to IL_4KTG_004

Geometric discrepancy: 0.1118

The information below is about IL_4KTG_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9BUP|1|AA|G|444
9BUP|1|AA|A|445
9BUP|1|AA|G|446
*
9BUP|1|AA|C|701
9BUP|1|AA|U|702
9BUP|1|AA|U|703

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein L32

Chain A9

60S ribosomal protein L35ae

Chain AC

5.8S ribosomal RNA; 5.8S rRNA