IL_9BUP_020
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUA*UUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_020 not in the Motif Atlas
- Geometric match to IL_8CRE_134
- Geometric discrepancy: 0.1441
- The information below is about IL_8CRE_134
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
9BUP|1|AA|A|519
9BUP|1|AA|U|520
9BUP|1|AA|U|521
9BUP|1|AA|A|522
*
9BUP|1|AA|U|633
9BUP|1|AA|U|634
9BUP|1|AA|U|635
9BUP|1|AA|U|636
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain A9
- 60S ribosomal protein L35ae
- Chain AF
- 60S ribosomal protein L4
- Chain AI
- 60S ribosomal protein L6
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