IL_9BUP_024

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAC*GU

Length

6 nucleotides

Bulged bases

9BUP|1|AA|C|592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_024 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2808

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9BUP|1|AA|G|591
9BUP|1|AA|C|592
9BUP|1|AA|A|593
9BUP|1|AA|C|594
*
9BUP|1|AA|G|599
9BUP|1|AA|U|600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AN

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a