IL_9BUP_034
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_034 not in the Motif Atlas
- Homologous match to IL_8CRE_033
- Geometric discrepancy: 0.0602
- The information below is about IL_8CRE_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9BUP|1|AA|U|953
9BUP|1|AA|G|954
9BUP|1|AA|A|955
9BUP|1|AA|A|956
9BUP|1|AA|G|957
*
9BUP|1|AA|U|974
9BUP|1|AA|G|975
9BUP|1|AA|G|976
9BUP|1|AA|A|977
9BUP|1|AA|G|978
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain AT
- 60S ribosomal protein L19
- Chain Ah
- Large ribosomal subunit protein eL43
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