IL_9BUP_053
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCAUGAG*CUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1319, 9BUP|1|AA|G|1320, 9BUP|1|AA|A|1444, 9BUP|1|AA|A|1446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_053 not in the Motif Atlas
- Homologous match to IL_8P9A_279
- Geometric discrepancy: 0.2203
- The information below is about IL_8P9A_279
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|AA|C|1315
9BUP|1|AA|U|1316
9BUP|1|AA|C|1317
9BUP|1|AA|A|1318
9BUP|1|AA|U|1319
9BUP|1|AA|G|1320
9BUP|1|AA|A|1321
9BUP|1|AA|G|1322
*
9BUP|1|AA|C|1442
9BUP|1|AA|U|1443
9BUP|1|AA|A|1444
9BUP|1|AA|A|1445
9BUP|1|AA|A|1446
9BUP|1|AA|G|1447
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L6
- Chain AK
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L14
- Chain AU
- 60S ribosomal protein L18a
- Chain Af
- Ubiquitin-60S ribosomal protein L40
Coloring options: