IL_9BUP_054
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUCCCAUAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1324, 9BUP|1|AA|A|1430, 9BUP|1|AA|U|1433, 9BUP|1|AA|G|1434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_054 not in the Motif Atlas
- Homologous match to IL_8CRE_055
- Geometric discrepancy: 0.1838
- The information below is about IL_8CRE_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|G|1322
9BUP|1|AA|A|1323
9BUP|1|AA|U|1324
9BUP|1|AA|C|1325
9BUP|1|AA|C|1326
9BUP|1|AA|C|1327
9BUP|1|AA|A|1328
9BUP|1|AA|U|1329
9BUP|1|AA|A|1330
9BUP|1|AA|A|1331
9BUP|1|AA|A|1332
9BUP|1|AA|A|1333
*
9BUP|1|AA|U|1427
9BUP|1|AA|G|1428
9BUP|1|AA|A|1429
9BUP|1|AA|A|1430
9BUP|1|AA|A|1431
9BUP|1|AA|A|1432
9BUP|1|AA|U|1433
9BUP|1|AA|G|1434
9BUP|1|AA|G|1435
9BUP|1|AA|A|1436
9BUP|1|AA|U|1437
9BUP|1|AA|G|1438
9BUP|1|AA|G|1439
9BUP|1|AA|C|1440
9BUP|1|AA|G|1441
9BUP|1|AA|C|1442
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain A9
- 60S ribosomal protein L35ae
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AE
- 60S ribosomal protein L3
- Chain AK
- 60S ribosomal protein L13
- Chain AQ
- 60S ribosomal protein L10
- Chain Af
- Ubiquitin-60S ribosomal protein L40
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