IL_9BUP_055
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_055 not in the Motif Atlas
- Homologous match to IL_8P9A_281
- Geometric discrepancy: 0.0774
- The information below is about IL_8P9A_281
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9BUP|1|AA|G|1335
9BUP|1|AA|U|1336
9BUP|1|AA|G|1337
*
9BUP|1|AA|C|1424
9BUP|1|AA|C|1425
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AH
- 60S ribosomal protein L6
- Chain AU
- 60S ribosomal protein L18a
- Chain Af
- Ubiquitin-60S ribosomal protein L40
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