IL_9BUP_056
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 9BUP|1|AA|G|1578
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_056 not in the Motif Atlas
- Homologous match to IL_8CRE_061
- Geometric discrepancy: 0.0663
- The information below is about IL_8CRE_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
9BUP|1|AA|C|1525
9BUP|1|AA|G|1526
9BUP|1|AA|U|1527
*
9BUP|1|AA|A|1577
9BUP|1|AA|G|1578
9BUP|1|AA|U|1579
9BUP|1|AA|G|1580
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L28
- Chain A8
- 60S ribosomal protein L32
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein L4
- Chain AO
- 60S ribosomal protein L27a
Coloring options: