IL_9BUP_069
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCGG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_069 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2494
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9BUP|1|AA|U|1826
9BUP|1|AA|C|1827
9BUP|1|AA|G|1828
9BUP|1|AA|G|1829
*
9BUP|1|AA|C|1996
9BUP|1|AA|G|1997
9BUP|1|AA|A|1998
9BUP|1|AA|A|1999
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein L19
- Chain AX
- 60S ribosomal protein L22
- Chain Aa
- 60S ribosomal protein L34
- Chain Ad
- 60S ribosomal protein L38
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