IL_9BUP_070
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUACC*GCAAUA
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_070 not in the Motif Atlas
- Homologous match to IL_8CRE_076
- Geometric discrepancy: 0.172
- The information below is about IL_8CRE_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_00981.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|U|1849
9BUP|1|AA|U|1850
9BUP|1|AA|A|1851
9BUP|1|AA|C|1852
9BUP|1|AA|C|1853
*
9BUP|1|AA|G|1967
9BUP|1|AA|C|1968
9BUP|1|AA|A|1969
9BUP|1|AA|A|1970
9BUP|1|AA|U|1971
9BUP|1|AA|A|1972
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain Aa
- 60S ribosomal protein L34
- Chain Ad
- 60S ribosomal protein L38
Coloring options: