IL_9BUP_073

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_073 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.2141

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BUP|1|AA|A|1907
9BUP|1|AA|U|1908
9BUP|1|AA|U|1909
9BUP|1|AA|C|1910
*
9BUP|1|AA|G|1959
9BUP|1|AA|U|1960
9BUP|1|AA|U|1961
9BUP|1|AA|U|1962

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ad

60S ribosomal protein L38