IL_9BUP_076
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAAAAA*UAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_076 not in the Motif Atlas
- Geometric match to IL_4V9F_059
- Geometric discrepancy: 0.1786
- The information below is about IL_4V9F_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.5
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|AA|A|2151
9BUP|1|AA|A|2152
9BUP|1|AA|A|2153
9BUP|1|AA|A|2154
9BUP|1|AA|A|2155
9BUP|1|AA|A|2156
*
9BUP|1|AA|U|2640
9BUP|1|AA|A|2641
9BUP|1|AA|U|2642
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A7
- 60S ribosomal protein L31
- Chain AE
- 60S ribosomal protein L3
- Chain AW
- 60S ribosomal protein L17
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