IL_9BUP_085
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAAAG*UAUUAACA
- Length
- 15 nucleotides
- Bulged bases
- 9BUP|1|AA|A|2452, 9BUP|1|AA|A|2453, 9BUP|1|AA|U|2468, 9BUP|1|AA|C|2472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_085 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.0843
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|AA|U|2449
9BUP|1|AA|G|2450
9BUP|1|AA|A|2451
9BUP|1|AA|A|2452
9BUP|1|AA|A|2453
9BUP|1|AA|A|2454
9BUP|1|AA|G|2455
*
9BUP|1|AA|U|2466
9BUP|1|AA|A|2467
9BUP|1|AA|U|2468
9BUP|1|AA|U|2469
9BUP|1|AA|A|2470
9BUP|1|AA|A|2471
9BUP|1|AA|C|2472
9BUP|1|AA|A|2473
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain Ah
- Large ribosomal subunit protein eL43
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
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