IL_9BUP_090

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_090 not in the Motif Atlas

Geometric match to IL_8CRE_094

Geometric discrepancy: 0.0651

The information below is about IL_8CRE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

9BUP|1|AA|G|2569
9BUP|1|AA|C|2570
*
9BUP|1|AA|G|2600
9BUP|1|AA|C|2601
9BUP|1|AA|A|2602
9BUP|1|AA|U|2603

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L41

Chain S8

Transfer RNA; tRNA

Chain SA

Small subunit ribosomal RNA; SSU rRNA