IL_9BUP_098

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUG*CUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_098 not in the Motif Atlas

Geometric match to IL_1G1X_003

Geometric discrepancy: 0.3657

The information below is about IL_1G1X_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BUP|1|AA|G|2744
9BUP|1|AA|G|2745
9BUP|1|AA|U|2746
9BUP|1|AA|G|2747
*
9BUP|1|AA|C|2801
9BUP|1|AA|U|2802
9BUP|1|AA|A|2803
9BUP|1|AA|C|2804

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain S7

Transfer RNA; tRNA