IL_9BUP_109

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9BUP|1|AA|G|3304, 9BUP|1|AA|A|3305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_109 not in the Motif Atlas

Homologous match to IL_8CRE_116

Geometric discrepancy: 0.0487

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9BUP|1|AA|C|3238
9BUP|1|AA|U|3239
9BUP|1|AA|C|3240
*
9BUP|1|AA|G|3302
9BUP|1|AA|U|3303
9BUP|1|AA|G|3304
9BUP|1|AA|A|3305
9BUP|1|AA|G|3306

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AM

60S ribosomal protein L23