IL_9BUP_111

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*AAAG

Length

6 nucleotides

Bulged bases

9BUP|1|AA|A|3270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_111 not in the Motif Atlas

Homologous match to IL_8CRE_120

Geometric discrepancy: 0.1702

The information below is about IL_8CRE_120

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9BUP|1|AA|U|3250
9BUP|1|AA|U|3251
*
9BUP|1|AA|A|3268
9BUP|1|AA|A|3269
9BUP|1|AA|A|3270
9BUP|1|AA|G|3271

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AK

60S ribosomal protein L13

Chain Af

Ubiquitin-60S ribosomal protein L40