IL_9BUP_115
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAC*GAUUAAA
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|AA|U|3526, 9BUP|1|AA|U|3527, 9BUP|1|AA|A|3529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_115 not in the Motif Atlas
- Homologous match to IL_8CRE_123
- Geometric discrepancy: 0.3262
- The information below is about IL_8CRE_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
9BUP|1|AA|U|3390
9BUP|1|AA|G|3391
9BUP|1|AA|A|3392
9BUP|1|AA|C|3393
*
9BUP|1|AA|G|3524
9BUP|1|AA|A|3525
9BUP|1|AA|U|3526
9BUP|1|AA|U|3527
9BUP|1|AA|A|3528
9BUP|1|AA|A|3529
9BUP|1|AA|A|3530
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L3
- Chain AK
- 60S ribosomal protein L13
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