3D structure

PDB id
9BUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AUC*GUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9BUP_116 not in the Motif Atlas
Homologous match to IL_8P9A_343
Geometric discrepancy: 0.1156
The information below is about IL_8P9A_343
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_71625.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
78

Unit IDs

9BUP|1|AA|A|3398
9BUP|1|AA|U|3399
9BUP|1|AA|C|3400
*
9BUP|1|AA|G|3426
9BUP|1|AA|U|3427
9BUP|1|AA|U|3428

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L3
Chain AM
60S ribosomal protein L23

Coloring options:


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