IL_9BUP_117

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGGUAC*GGAUUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_117 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1545

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9BUP|1|AA|U|3405
9BUP|1|AA|U|3406
9BUP|1|AA|G|3407
9BUP|1|AA|G|3408
9BUP|1|AA|U|3409
9BUP|1|AA|A|3410
9BUP|1|AA|C|3411
*
9BUP|1|AA|G|3416
9BUP|1|AA|G|3417
9BUP|1|AA|A|3418
9BUP|1|AA|U|3419
9BUP|1|AA|U|3420
9BUP|1|AA|A|3421

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AM

60S ribosomal protein L23

Chain Af

Ubiquitin-60S ribosomal protein L40