IL_9BUP_118

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAUU*AAG

Length

8 nucleotides

Bulged bases

9BUP|1|AA|A|3477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_118 not in the Motif Atlas

Homologous match to IL_8P9A_345

Geometric discrepancy: 0.1375

The information below is about IL_8P9A_345

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9BUP|1|AA|C|3433
9BUP|1|AA|A|3434
9BUP|1|AA|A|3435
9BUP|1|AA|U|3436
9BUP|1|AA|U|3437
*
9BUP|1|AA|A|3476
9BUP|1|AA|A|3477
9BUP|1|AA|G|3478

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein L24

Chain AE

60S ribosomal protein L3

Chain AM

60S ribosomal protein L23