IL_9BUP_119

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UACAG*CGAAG

Length

10 nucleotides

Bulged bases

9BUP|1|AA|C|3442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_119 not in the Motif Atlas

Homologous match to IL_8CRE_127

Geometric discrepancy: 0.1238

The information below is about IL_8CRE_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

9BUP|1|AA|U|3440
9BUP|1|AA|A|3441
9BUP|1|AA|C|3442
9BUP|1|AA|A|3443
9BUP|1|AA|G|3444
*
9BUP|1|AA|C|3469
9BUP|1|AA|G|3470
9BUP|1|AA|A|3471
9BUP|1|AA|A|3472
9BUP|1|AA|G|3473

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein L24

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3