IL_9BUP_120

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

9BUP|1|AA|G|3463, 9BUP|1|AA|U|3464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_120 not in the Motif Atlas

Homologous match to IL_8P9A_347

Geometric discrepancy: 0.3397

The information below is about IL_8P9A_347

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|U|3448
9BUP|1|AA|U|3449
*
9BUP|1|AA|A|3462
9BUP|1|AA|G|3463
9BUP|1|AA|U|3464
9BUP|1|AA|G|3465

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AT

60S ribosomal protein L19