IL_9BUP_125

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_125 not in the Motif Atlas

Homologous match to IL_8CRE_135

Geometric discrepancy: 0.1692

The information below is about IL_8CRE_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BUP|1|AA|A|3694
9BUP|1|AA|C|3695
9BUP|1|AA|U|3696
9BUP|1|AA|G|3697
*
9BUP|1|AA|C|3705
9BUP|1|AA|U|3706
9BUP|1|AA|U|3707
9BUP|1|AA|U|3708

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AE

60S ribosomal protein L3

Chain AW

60S ribosomal protein L17