IL_9BUP_129
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAA*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|AA|G|3761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_129 not in the Motif Atlas
- Homologous match to IL_8CRE_139
- Geometric discrepancy: 0.0767
- The information below is about IL_8CRE_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70411.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AA|U|3724
9BUP|1|AA|G|3725
9BUP|1|AA|U|3726
9BUP|1|AA|A|3727
9BUP|1|AA|A|3728
9BUP|1|AA|A|3729
*
9BUP|1|AA|U|3759
9BUP|1|AA|U|3760
9BUP|1|AA|G|3761
9BUP|1|AA|A|3762
9BUP|1|AA|G|3763
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A0
- 60S ribosomal protein L24
- Chain A7
- 60S ribosomal protein L31
- Chain AE
- 60S ribosomal protein L3
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