IL_9BUP_131

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_131 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.1816

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9BUP|1|AA|A|3734
9BUP|1|AA|A|3735
9BUP|1|AA|A|3736
9BUP|1|AA|G|3737
*
9BUP|1|AA|C|3752
9BUP|1|AA|G|3753
9BUP|1|AA|A|3754
9BUP|1|AA|U|3755

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AX

60S ribosomal protein L22

Chain SL

40S ribosomal protein S8