IL_9BUP_137
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9BUP|1|AB|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_137 not in the Motif Atlas
- Geometric match to IL_3W3S_003
- Geometric discrepancy: 0.1262
- The information below is about IL_3W3S_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
9BUP|1|AB|G|82
9BUP|1|AB|G|83
9BUP|1|AB|U|84
9BUP|1|AB|G|85
*
9BUP|1|AB|C|92
9BUP|1|AB|G|93
9BUP|1|AB|C|94
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AU
- 60S ribosomal protein L18a
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