IL_9BUP_138
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAA*UCAG
- Length
- 7 nucleotides
- Bulged bases
- 9BUP|1|AC|A|98
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_138 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.2075
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_76400.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
9BUP|1|AC|C|68
9BUP|1|AC|A|69
9BUP|1|AC|A|70
*
9BUP|1|AC|U|96
9BUP|1|AC|C|97
9BUP|1|AC|A|98
9BUP|1|AC|G|99
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 60S ribosomal protein L26
- Chain Ac
- Ribosomal protein L37
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