IL_9BUP_141

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_141 not in the Motif Atlas

Geometric match to IL_8CRE_038

Geometric discrepancy: 0.2453

The information below is about IL_8CRE_038

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9BUP|1|S7|G|25
9BUP|1|S7|C|26
9BUP|1|S7|G|27
*
9BUP|1|S7|C|41
9BUP|1|S7|C|42

Current chains

Chain S7

tRNA

Nearby chains

Chain S8

Transfer RNA; tRNA

Chain SI

40S ribosomal protein S5