IL_9BUP_151

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUACU*AUCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_151 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.2682

The information below is about IL_3LOA_001

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9BUP|1|SA|C|119
9BUP|1|SA|U|120
9BUP|1|SA|A|121
9BUP|1|SA|C|122
9BUP|1|SA|U|123
*
9BUP|1|SA|A|302
9BUP|1|SA|U|303
9BUP|1|SA|C|304
9BUP|1|SA|G|305

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4

Chain SL

40S ribosomal protein S8