IL_9BUP_152
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9BUP|1|SA|U|168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_152 not in the Motif Atlas
- Homologous match to IL_8CRE_400
- Geometric discrepancy: 0.1235
- The information below is about IL_8CRE_400
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.1
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|SA|G|141
9BUP|1|SA|G|142
9BUP|1|SA|A|143
9BUP|1|SA|U|144
9BUP|1|SA|A|145
9BUP|1|SA|A|146
9BUP|1|SA|C|147
*
9BUP|1|SA|G|163
9BUP|1|SA|C|164
9BUP|1|SA|U|165
9BUP|1|SA|A|166
9BUP|1|SA|A|167
9BUP|1|SA|U|168
9BUP|1|SA|A|169
9BUP|1|SA|C|170
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S1
- 40S ribosomal protein S24
- Chain SH
- 40S ribosomal protein S6
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