IL_9BUP_163
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGU*AGAGUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|SA|G|546, 9BUP|1|SA|U|547, 9BUP|1|SA|A|549
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_163 not in the Motif Atlas
- Homologous match to IL_8CRE_418
- Geometric discrepancy: 0.3623
- The information below is about IL_8CRE_418
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02511.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|G|521
9BUP|1|SA|G|522
9BUP|1|SA|U|523
*
9BUP|1|SA|A|543
9BUP|1|SA|G|544
9BUP|1|SA|A|545
9BUP|1|SA|G|546
9BUP|1|SA|U|547
9BUP|1|SA|A|548
9BUP|1|SA|A|549
9BUP|1|SA|C|550
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S6
- 40S ribosomal protein S30
- Chain SE
- 40S ribosomal protein S9
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