IL_9BUP_166
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9BUP|1|SA|A|586, 9BUP|1|SA|U|588, 9BUP|1|SA|U|589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_166 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1705
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|G|569
9BUP|1|SA|U|570
9BUP|1|SA|G|571
9BUP|1|SA|C|572
9BUP|1|SA|C|573
9BUP|1|SA|A|574
9BUP|1|SA|G|575
*
9BUP|1|SA|C|582
9BUP|1|SA|G|583
9BUP|1|SA|G|584
9BUP|1|SA|U|585
9BUP|1|SA|A|586
9BUP|1|SA|A|587
9BUP|1|SA|U|588
9BUP|1|SA|U|589
9BUP|1|SA|C|590
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S6
- 40S ribosomal protein S30
- Chain S9
- Transfer RNA; tRNA
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S23
- Chain mR
- mRNA
Coloring options: