IL_9BUP_171
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- 9BUP|1|SA|A|866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_171 not in the Motif Atlas
- Geometric match to IL_9DFE_073
- Geometric discrepancy: 0.2002
- The information below is about IL_9DFE_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_24264.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|SA|A|796
9BUP|1|SA|C|797
*
9BUP|1|SA|G|865
9BUP|1|SA|A|866
9BUP|1|SA|A|867
9BUP|1|SA|U|868
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S7
- Chain SK
- 40S ribosomal protein S15A
- Chain SQ
- 40S ribosomal protein S23
- Chain SV
- 40S ribosomal protein S11
Coloring options: