IL_9BUP_173
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGUAAAUU*ACUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_173 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3997
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|G|801
9BUP|1|SA|A|802
9BUP|1|SA|G|803
9BUP|1|SA|U|804
9BUP|1|SA|A|805
9BUP|1|SA|A|806
9BUP|1|SA|A|807
9BUP|1|SA|U|808
9BUP|1|SA|U|809
*
9BUP|1|SA|A|854
9BUP|1|SA|C|855
9BUP|1|SA|U|856
9BUP|1|SA|A|857
9BUP|1|SA|U|858
9BUP|1|SA|A|859
9BUP|1|SA|G|860
9BUP|1|SA|C|861
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S9
- Chain SF
- 40S ribosomal protein S4
- Chain SK
- 40S ribosomal protein S15A
- Chain SV
- 40S ribosomal protein S11
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