IL_9BUP_176

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_176 not in the Motif Atlas

Homologous match to IL_8P9A_415

Geometric discrepancy: 0.5703

The information below is about IL_8P9A_415

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

9BUP|1|SA|C|881
9BUP|1|SA|A|882
9BUP|1|SA|A|883
*
9BUP|1|SA|U|919
9BUP|1|SA|A|920
9BUP|1|SA|G|921

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain SJ

40S ribosomal protein S7