IL_9BUP_177

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUAA*UGGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_177 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3277

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9BUP|1|SA|G|884
9BUP|1|SA|C|885
9BUP|1|SA|U|886
9BUP|1|SA|A|887
9BUP|1|SA|A|888
*
9BUP|1|SA|U|914
9BUP|1|SA|G|915
9BUP|1|SA|G|916
9BUP|1|SA|C|917
9BUP|1|SA|U|918

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19