IL_9BUP_183
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGUCAG*CUUAGAUUUU
- Length
- 17 nucleotides
- Bulged bases
- 9BUP|1|SA|A|982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_183 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.2677
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BUP|1|SA|A|962
9BUP|1|SA|U|963
9BUP|1|SA|G|964
9BUP|1|SA|U|965
9BUP|1|SA|C|966
9BUP|1|SA|A|967
9BUP|1|SA|G|968
*
9BUP|1|SA|C|979
9BUP|1|SA|U|980
9BUP|1|SA|U|981
9BUP|1|SA|A|982
9BUP|1|SA|G|983
9BUP|1|SA|A|984
9BUP|1|SA|U|985
9BUP|1|SA|U|986
9BUP|1|SA|U|987
9BUP|1|SA|U|988
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S3a
- Chain SP
- 40S ribosomal protein S11
Coloring options: