IL_9BUP_184

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_184 not in the Motif Atlas

Geometric match to IL_4LFB_032

Geometric discrepancy: 0.1366

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9BUP|1|SA|G|1054
9BUP|1|SA|G|1055
9BUP|1|SA|G|1056
9BUP|1|SA|A|1057
9BUP|1|SA|G|1058
*
9BUP|1|SA|U|1084
9BUP|1|SA|C|1085

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S ribosomal protein L2

Chain SP

40S ribosomal protein S11