IL_9BUP_191
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9BUP|1|SA|C|1259, 9BUP|1|SA|C|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_191 not in the Motif Atlas
- Homologous match to IL_8CRE_445
- Geometric discrepancy: 0.1062
- The information below is about IL_8CRE_445
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9BUP|1|SA|A|1258
9BUP|1|SA|C|1259
9BUP|1|SA|C|1260
9BUP|1|SA|A|1261
*
9BUP|1|SA|U|1914
9BUP|1|SA|C|1915
9BUP|1|SA|C|1916
9BUP|1|SA|C|1917
9BUP|1|SA|U|1918
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S5
- 40S ribosomal protein S28e
- Chain S7
- Transfer RNA; tRNA
- Chain S8
- Transfer RNA; tRNA
- Chain SM
- 40S ribosomal protein S16
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