IL_9BUP_194

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_194 not in the Motif Atlas

Homologous match to IL_8CRE_447

Geometric discrepancy: 0.3447

The information below is about IL_8CRE_447

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9BUP|1|SA|G|1279
9BUP|1|SA|G|1280
*
9BUP|1|SA|C|1705
9BUP|1|SA|A|1706
9BUP|1|SA|C|1707

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S8

Transfer RNA; tRNA

Chain SS

40S ribosomal protein S18

Chain SX

40S ribosomal protein S19