IL_9BUP_198
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|SA|U|1678, 9BUP|1|SA|G|1681
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_198 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.208
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|SA|U|1377
9BUP|1|SA|G|1378
9BUP|1|SA|G|1379
*
9BUP|1|SA|U|1676
9BUP|1|SA|C|1677
9BUP|1|SA|U|1678
9BUP|1|SA|G|1679
9BUP|1|SA|U|1680
9BUP|1|SA|G|1681
9BUP|1|SA|A|1682
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SN
- 40S ribosomal protein S20e
- Chain SO
- 40S ribosomal protein S10
- Chain ST
- 40S ribosomal protein S29
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