IL_9BUP_207

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_207 not in the Motif Atlas

Geometric match to IL_8CRE_091

Geometric discrepancy: 0.3143

The information below is about IL_8CRE_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9BUP|1|SA|A|1844
9BUP|1|SA|U|1845
*
9BUP|1|SA|A|1859
9BUP|1|SA|A|1860
9BUP|1|SA|U|1861

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain SX

40S ribosomal protein S19

Chain SY

40S ribosomal protein S19