IL_9C3H_011

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9C3H|1|L5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_011 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2581

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|C|118
9C3H|1|L5|G|119
9C3H|1|L5|A|120
9C3H|1|L5|A|121
*
9C3H|1|L5|U|152
9C3H|1|L5|G|153

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15

Chain LO

Large ribosomal subunit protein uL29