IL_9C3H_016

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9C3H|1|L5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_016 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.2684

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9C3H|1|L5|C|195
9C3H|1|L5|C|196
*
9C3H|1|L5|G|244
9C3H|1|L5|C|245
9C3H|1|L5|G|246

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LE

Large ribosomal subunit protein uL24